PUBLICATIONS
AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics
Mongia A, Zohora FT, Burget NG, Zhou Y, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW, Faryabi RB
Nature Communications
2024
Modeling type 1 diabetes progression using machine learning and single-cell transcriptomic measurements in human islets
Patil AR, Schug J, Liu C, Lahori D, Descamps HC; Human Pancreas Analysis Consortium; Naji A, Kaestner KH, Faryabi RB, Vahedi
Cell Reports Medicine
2024
Spatial promoter-enhancer hubs in cancer: organization, regulation, and function
Zhao J, Faryabi RB
Trends in Cancer
2023
Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity
Goldman N, Chandra A, Johnson I, Sullivan MA, Patil AR, Vanderbeck A, Jay A, Zhou Y, Ferrari EK, Mayne L, Aguilan J, Xue HH, Faryabi RB, John Wherry E, Sidoli S, Maillard I, Vahedi G
Nature Immunology
2023
The pseudokinase Trib1 regulates the transition of exhausted T cells to a KLR+ CD8+ effector state, and its deletion improves checkpoint blockade
McClory SE, Bardhan O, Rome KS, Giles JR, Baxter AE, Xu L, Gimotty PA, Faryabi RB, Wherry EJ, Pear WS, Jordan MS
Cell Reports
2023
Single-cell expression profiling of islets generated by the Human Pancreas Analysis Program
Patil AR, Schug J, Naji A, Kaestner KH, Faryabi RB, Vahedi G
Nature Metabolism
2023