PUBLICATIONS
Enhancer-promoter hubs organize transcriptional networks promoting oncogenesis and drug resistance
Perlman BS, Burget NG, Zhou Y, Schwartz GW, Petrovic J, Modrusan Z, Faryabi RB
Nature Communications
2024
Oncogenic transcription factors instruct promoter-enhancer hubs in individual triple negative breast cancer cells
Zhao J, Zhou Y, Tzelepis I, Burget NG, Shi J, Faryabi RB
Science Advances
2024
AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics
Mongia A, Zohora FT, Burget NG, Zhou Y, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW, Faryabi RB
Nature Communications
2024
Modeling type 1 diabetes progression using machine learning and single-cell transcriptomic measurements in human islets
Patil AR, Schug J, Liu C, Lahori D, Descamps HC; Human Pancreas Analysis Consortium; Naji A, Kaestner KH, Faryabi RB, Vahedi
Cell Reports Medicine
2024
Spatial promoter-enhancer hubs in cancer: organization, regulation, and function
Zhao J, Faryabi RB
Trends in Cancer
2023
Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity
Goldman N, Chandra A, Johnson I, Sullivan MA, Patil AR, Vanderbeck A, Jay A, Zhou Y, Ferrari EK, Mayne L, Aguilan J, Xue HH, Faryabi RB, John Wherry E, Sidoli S, Maillard I, Vahedi G
Nature Immunology
2023