PUBLICATIONS
Lineage-determining transcription factors constrain cohesin to drive multi-enhancer oncogene regulation
Zhou Y*, Jay A*, Burget N, Friedrich T, Yoon S, Alsing J, Nir G, Grosschedl R, Vahedi G#, Faryabi RB#
Nature Cell Biology
2025
Joint profiling of gene expression and chromatin accessibility in pancreatic lymph nodes and spleens in human type 1 diabetes
Abedi M*, Rai P*, Zhou Y*, Liu C, Johnson I, Chandra A, Fasolino M, Rostami S, Wang W, Min Z, Li Y, Yu M, Jay A, Lian V, Silverman M, Kaestner KH, Naji A, Faryabi RB#, Vahedi G#
Science Immunology
2025
OLIVE Provides Rapid Visualization and Analysis of Chromatin Tracing Experiments
Zhou Y*, Sheng Y*, Hu D*, Jay A, Vahedi G, Faryabi RB
Cell Reports Methods
2025
The novel immunocompetent Eµ-SOX11 CCND1 mouse model phenotypically and molecularly resembles human mantle cell lymphoma
Jafari H, Brown-Burke F, Pray B, Sloan S, Helmig-Mason J, Hout I, Leon S, Long M, Chan WK, Hanel W, Corps K, Leshchenko VV, Edwards D, Prakash Shukla R, Reci S, Vaddi K, Scherle P, Collier P, La Ferlita A, Singh S, Distefano R, Lapalombella R, Sehgal L, Faryabi RB, Meydan C, Mason CE, Baiocchi RA, Parekh S, Alinari L
Clinical Cancer Research
2025
Single-allele chromatin tracing reveals genomic clustering of paralogous transcription factors as a mechanism for developmental robustness in T Cells
Jay A*, Zhou Y*, Yoon S, Abeje BN, Chandra A, Wald J, Raj A, Faryabi RB#, Vahedi G#
bioRxiv
2025
Azurify integrates cancer genomics with machine learning to classify the clinical significance of somatic variants
Bigdeli A, Chandrashekar DS, Chitturi A, Rushton C, Mackinnon AC, Segal J, Harada S, Sacan A, Faryabi RB
bioRxiv
2025