PUBLICATIONS
OLIVE Provides Rapid Visualization and Analysis of Chromatin Tracing Experiments
Zhou Y, Sheng Y, Hu D, Jay A, Vahedi G, Faryabi RB
bioRxiv
2025
Single-allele chromatin tracing reveals genomic clustering of paralogous transcription factors as a mechanism for developmental robustness in T Cells
Jay A, Zhou Y, Yoon S, Abeje BN, Chandra A, Wald J, Raj A, Faryabi RB, Vahedi G
bioRxiv
2025
Azurify integrates cancer genomics with machine learning to classify the clinical significance of somatic variants
Bigdeli A, Chandrashekar DS, Chitturi A, Rushton C, Mackinnon AC, Segal J, Harada S, Sacan A, Faryabi RB
bioRxiv
2025
Enhancer-promoter hubs organize transcriptional networks promoting oncogenesis and drug resistance
Perlman BS, Burget NG, Zhou Y, Schwartz GW, Petrovic J, Modrusan Z, Faryabi RB
Nature Communications
2024
Oncogenic transcription factors instruct promoter-enhancer hubs in individual triple negative breast cancer cells
Zhao J, Zhou Y, Tzelepis I, Burget NG, Shi J, Faryabi RB
Science Advances
2024
AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics
Mongia A, Zohora FT, Burget NG, Zhou Y, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW, Faryabi RB
Nature Communications
2024